All Publications

2014
Straehle, C N, Kandemir, M, Köthe, U and Hamprecht, F A (2014). Multiple instance learning with response-optimized random forests. ICPR. Proceedings. 3768 - 3773 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (296.66 KB)
Tek, B F, Kröger, T, Mikula, S and Hamprecht, F A (2014). Automated Cell Nucleus Detection for Large-Volume Electron Microscopy of Neural Tissue. ISBI. Proceedings. 69-72 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (533.92 KB)
Urban, G (2014). Neural Networks: Optimization And Applications. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Urban, G, Bendszus, M, Hamprecht, F A and Kleesiek, J (2014). Multi-modal Brain Tumor Segmentation using Deep Convolutional NeuralNetworks. MICCAI BraTS (Brain Tumor Segmentation) Challenge. Proceedings, winningcontribution. 31-35 Google Scholar BibTeX RTF EndNote XML
Welbl, J (2014). Casting Random Forests as Artificial Neural Networks (and Profiting from It). GCPR. Proceedings. 765-771 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (376.24 KB)
Wieler, M (2014). Multiple Instance Learning with Random Forests and Applications in Industrial Optical Inspection. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Yarkony, J, Zhang, C and Fowlkes, C C (2014). Hierarchical Planar Correlation Clustering for Cell Segmentation. EMMCVPR. Proceedings. Springer. 8932 492-504 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (548.12 KB)
Zhang, C, Huber, F, Knop, M and Hamprecht, F A (2014). Yeast Cell Detection and Segmentation in Bright Field Microscopy. ISBI. Proceedings. IEEE Computer Society. 1267-1270 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (4.13 MB)
Zhang, C, Yarkony, J and Hamprecht, F A (2014). Cell detection and segmentation using correlation clustering. MICCAI. Proceedings. Springer. 9-16 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (8.06 MB)
Kreshuk, A, Köthe, U, Pax, E, Bock, D D and Hamprecht, F A (2014). Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS ONE. 9 2 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (16.66 MB)
Lindner, R, Lou, X, Reinstein, J, Shoeman, R L, Hamprecht, F A and Winkler, A (2014). Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation. Journal of The American Society for Mass Spectrometry. 25 1018-1028 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.1 MB)

2013
Diego, F and Hamprecht, F A (2013). Learning Multi-Level Sparse Representation for Identifying Neuronal Activity. Signal Processing with Adaptive Sparse Structured Representations Workshop (SPARS). Book of Abstracts Google Scholar BibTeX RTF EndNote XML Technical Report (1.05 MB)
Diego, F and Hamprecht, F A (2013). Learning Multi-Level Sparse Representation. NIPS. Proceedings. http://papers.nips.cc/paper/5076-learning-multi-level-sparse-representations Google Scholar BibTeX RTF EndNote XML Technical Report (2.79 MB)
Diego, F, Reichinnek, S, Both, M and Hamprecht, F A (2013). Automated Identification of Neuronal Activity from Calcium Imaging by Sparse Dictionary Learning. ISBI 2013. Proceedings. 1058-1061 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.82 MB)
Fiaschi, L, Grosser, K - H, Afonso, B, Zlatic, M and Hamprecht, F A (2013). Keeping Count: Leveraging Temporal Context to Count Heavily Overlapping Objects. ISBI 2013.Proceedings. 656-659 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (711.68 KB)
Hanslovsky, P (2013). Advanced Cell Tacking-By-Assignment. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Herrmannsdörfer, (2013). Simplestorm An Efficient Selfcalibrating Reconstruction Algorithm For Single And Multi-Channel Localisation Microscopy. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kappes, J H, Andres, B, Hamprecht, F A, Schnörr, C, Nowozin, S, Batra, D, Sungwoong, K, Kausler, B X, Lellmann, J, Komodakis, N and Rother, C (2013). A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems. CVPR 2013. Proceedings DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.35 MB)
Kausler, B X (2013). Tracking-by-Assignment as a Probabilistic Graphical Model with Applications in Developmental Biology. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Kröger, T, Mikula, S, Denk, W, Köthe, U and Hamprecht, F A (2013). Learning to Segment Neurons with Non-local Quality Measures. MICCAI 2013. Proceedings, part II. Springer. 8150 419-427 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.87 MB)
Maco, B, Holtmaat, A, Cantoni, M, Kreshuk, A, Straehle, C N, Hamprecht, F A and Knott, G W (2013). Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons. PloS one. 8 (2) DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.13 MB)
Mikut, R, Dickmeis, T, Driever, W, Geurts, P, Hamprecht, F A, Kausler, B X, Ledesma-Carbayo, M, Marée, R, Mikula, K, Pantazis, P, Ronneberger, O, Santos, A and Stotzka, R (2013). Automated Processing of Zebrafish Imaging Data: A Survey. Zebrafish. 10 (3) DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.73 MB)
Röder, (2013). Active Learning: New Approaches, and Industrial Applications. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Schiegg, M, Hanslovsky, P, Kausler, B X, Hufnagel, L and Hamprecht, F A (2013). Conservation Tracking. ICCV 2013. Proceedings. 2928--2935 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (5.22 MB)
Straehle, C N, Köthe, U and Hamprecht, F A (2013). Weakly supervised learning of image partitioning using decision trees with structured split criteria. ICCV 2013. Proceedings. 1849-1856 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (5.97 MB)
Straehle, C N, Peter, S, Köthe, U and Hamprecht, F A (2013). K-smallest Spanning Tree Segmentations. German Conference on Pattern Recognition (DAGM/GCPR). Proceedings. Springer. 375-384 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.18 MB)
Walecki, R (2013). Large-Scale Automatic Reconstruction Of Myelianated Axons And Detection Of The Nodes Of Ranvier. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Fiaschi, L (2013). Learning Based Biological Image Analysis. University of Heidelberg Google Scholar BibTeX RTF EndNote XML
Wanner, S, Straehle, C N and Goldlücke, B (2013). Globally Consistent Multi-Label Assignment on the Ray Space of 4D Light Fields. CVPR 2013. Proceedings. 1011-1018 DOI Google Scholar BibTeX RTF EndNote XML
Xu, B (2013). Weakly Supervised Learning: Active Schemes And Partial Annotations. University of Heidelberg Google Scholar BibTeX RTF EndNote XML

2012
Andres, B, Kappes, J H, Beier, T, Köthe, U and Hamprecht, F A (2012). The Lazy Flipper: Efficient Depth-Limited Exhaustive Search in Discrete Graphical Models. Computer Vision - {ECCV} 2012 - 12th European Conference on Computer Vision, Florence, Italy, October 7-13, 2012, Proceedings, Part {VII}. http://dx.doi.org/10.1007/978-3-642-33786-4_12 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (446.28 KB)
Álvarez, J M, Gevers, T, Diego, F and López, A M (2012). Road Geometry Classification by Adaptive Shape Models. IEEE Transactions on Intelligent Transportation Systems (ITS). 99 1-10 DOI Google Scholar BibTeX RTF EndNote XML
Andres, B, Köthe, U, Kröger, T, Helmstaedter, M, Briggmann, K L, Denk, W and Hamprecht, F A (2012). 3D Segmentation of SBFSEM Images of Neuropil by a Graphical Model over Supervoxel Boundaries. Medical Image Analysis. 16 (2012) 796-805 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (20.85 MB)
Andres, B, Kröger, T, Briggmann, K L, Denk, W, Norogod, N, Knott, G W, Köthe, U and Hamprecht, F A (2012). Globally Optimal Closed-Surface Segmentation for Connectomics. ECCV 2012. Proceedings, Part 3. 778-791 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.72 MB)
Diego, F, Serrat, J and López, A M (2012). Joint SpatioTemporal Alignment of Sequences. IEEE Transactions on Multimedia (TMM). PP (99) 1 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (5.15 MB)
Fiaschi, L, Nair, R, Köthe, U and Hamprecht, F A (2012). Learning to Count with Regression Forest and Structured Labels. ICPR 2012. Proceedings. 2685-2688 Google Scholar BibTeX RTF EndNote XML Technical Report (3.66 MB)
Funke, J, Andres, B, Hamprecht, F A, Cardona, A and Cook, M (2012). Efficient Automatic 3D-Reconstruction of Branching Neurons from EM Data. CVPR 2012. Proceedings. 1004-1011 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.64 MB)
Hanselmann, M, Röder, J, Köthe, U, Renard, B Y, Heeren, R M A and Hamprecht, F A (2012). Active Learning for Convenient Annotation and Classification of Secondary Ion Mass Spectrometry Images. Analytical Chemistry. 85 (1) 147-155 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (2.58 MB)
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). You Are Who Knows You: Predicting Links Between Non-Members of Facebook. European Conference on Complex Systems. Proceedings. 3 309-315 DOI Google Scholar BibTeX RTF EndNote XML Technical Report (1.92 MB)
Horvát, E - A, Hanselmann, M, Hamprecht, F A and Zweig, K A (2012). One plus one makes three (for social networks). PLoS ONE. 4,7 DOI Google Scholar BibTeX RTF EndNote XML

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